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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
2
Tyr
ATA
0
Cys
ACA
1
T
GAA
22
GGA
21
GTA
41
GCA
49
C
Leu
TAA
31
TGA
20
ochre
TTA
0
opal Sec
TCA
3
A
CAA
20
CGA
15
amber
CTA
0
Trp
CCA
28
G
C
Leu
AAG
2
Pro
AGG
1
His
ATG
0
Arg
ACG
17
T
GAG
14
GGG
12
GTG
26
GCG
7
C
TAG
24
TGG
24
Gln
TTG
23
TCG
16
A
CAG
16
CGG
15
CTG
15
CCG
16
G
A
Ile
AAT
6
Thr
AGT
4
Asn
ATT
0
Ser
ACT
0
T
GAT
33
GGT
18
GTT
38
GCT
28
C
TAT
6
TGT
41
Lys
TTT
30
Arg
TCT
25
A
Met
CAT
68
CGT
21
CTT
19
CCT
24
G
G
Val
AAC
2
Ala
AGC
1
Asp
ATC
0
Gly
ACC
1
T
GAC
16
GGC
14
GTC
45
GCC
34
C
TAC
31
TGC
53
Glu
TTC
45
TCC
44
A
CAC
12
CGC
12
CTC
14
CCC
19
G
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