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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
1
Cys
ACA
0
T
GAA
154
GGA
141
GTA
150
GCA
165
C
Leu
TAA
148
TGA
151
ochre
TTA
1
opal Sec
TCA
45
A
CAA
154
CGA
90
amber
CTA
0
Trp
CCA
143
G
C
Leu
AAG
10
Pro
AGG
0
His
ATG
0
Arg
ACG
128
T
GAG
156
GGG
105
GTG
130
GCG
40
C
TAG
160
TGG
176
Gln
TTG
165
TCG
110
A
CAG
104
CGG
90
CTG
100
CCG
91
G
A
Ile
AAT
2
Thr
AGT
3
Asn
ATT
0
Ser
ACT
0
T
GAT
106
GGT
143
GTT
196
GCT
145
C
TAT
11
TGT
165
Lys
TTT
179
Arg
TCT
158
A
Met
CAT
461
CGT
108
CTT
122
CCT
155
G
G
Val
AAC
0
Ala
AGC
1
Asp
ATC
0
Gly
ACC
0
T
GAC
134
GGC
119
GTC
164
GCC
158
C
TAC
171
TGC
140
Glu
TTC
179
TCC
159
A
CAC
79
CGC
89
CTC
107
CCC
93
G
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