The detailed information of tRNA gene sequence


Sequence ID>W1710791113
Genome IDLJNI01000128
Search identical group
Phylum/ClassUnclassified
Speciescandidate division TA06 bacterium DG_78 [LJNI]
Start position on genome 1365
End posion on genome 1270
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aaaaattcgc
tRNA gene sequence 
GGAGGTGCACGGGTGCTGGTGTGCCTGCTGGACTTCAAATCCAGGTATTCTGAGTAATCT
CAGAATGGTAGGTTCGATTCCTACGCGCCTCCGCCA
Downstream region at tRNA end position 
agttaagata
Secondary structure (Cloverleaf model)
>W1710791113	SeC(p)	TCA
                   c      GCCA agttaagata
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T + G
                     G - C
                     C - G          T T
                    A     C A T C C     A
      T C G        C      | | | | |     G
    G       T G G G       G T A G G     C
    G       + | | +                 T T
    T       G C C T
      G T          G     GTATTCTGAGTAATCTCAGAATG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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