The detailed information of tRNA gene sequence


Sequence ID>W1711475519
Genome IDMJUW02000080
Search identical group
Phylum/ClassPlanctomycetota
SpeciesCandidatus Brocadia sapporoensis sp. 40 [MJUW]
Start position on genome 24441
End posion on genome 24345
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aatcttggtg
tRNA gene sequence 
GGGAGTGCATGTCGGCTGGTGTCGGCGACGGACTTCAAATCCGGTCTGTCCCACTTTTAG
TAGGATAGGTGGGTTCGATTCCCACACACTCCCGCCA
Downstream region at tRNA end position 
ttatcttatg
Secondary structure (Cloverleaf model)
>W1711475519	SeC(p)	TCA
                   g      GCCA ttatcttatg
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     G - C
                     C   A          T T
                    A     C A C C C     A
      T C G        T      | | | | |     G
    G       G C T G       G T G G G     C
    G       | | + |                 T T
    T       C G G C
      G T          G     TCTGTCCCACTTTTAGTAGGATAG
                    A   G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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