The detailed information of tRNA gene sequence


Sequence ID>A171001340
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 1235432
End posion on genome 1235348
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gaaaaccgaa
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGGGATTCCCCGCG
CGGGTTCAAATCCCGCCCCCGGCGCta
Downstream region at tRNA end position 
cttctatatt
Secondary structure (Cloverleaf model)
>A171001340	Ser	GCT
                   a      GCta cttctatatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        C      | | | | |     A
    C       T C C G       G C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGGGGGATTCCCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.-

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