The detailed information of tRNA gene sequence


Sequence ID>A17A000029
Genome IDAP012489
Search identical group
Phylum/ClassThermoproteota
SpeciesAeropyrum camini SY1 = JCM 12091 [AP012489]
Start position on genome 133925
End posion on genome 133806
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gtaaaccagg
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGTAGAGCGCCGGCCTCGAAAGCCGGTGGTCGCGGGTTCGAATC
CCGCCGGCGGCTCCA
Downstream region at tRNA end position 
ccgcacccac
Secondary structure (Cloverleaf model)
>A17A000029	Ser	CGA
                   g      TCCA ccgcacccac
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     G
      C     C T C G       G C G G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C*G A
intron: position=35, length=45 (in A-loop)
GTACGGGTGTGCACCGAGGTCGCCTCCACCTGGTGGAGCCTCCGG
Intron
Comment/Decision
Genome/Seq. Info.-

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