The detailed information of tRNA gene sequence


Sequence ID>A17A000066
Genome IDCP001014
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum neutrophilum V24Sta [CP001014]
Start position on genome 673194
End posion on genome 673102
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
atgatgtgca
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCGAACGCGGGTGGTCCCGGGTTCAAATC
CCGGCGGGCCCACCA
Downstream region at tRNA end position 
tgtgcattga
Secondary structure (Cloverleaf model)
>A17A000066	Ser	CGA
                   a      ACCA tgtgcattga
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    C*G A
intron: position=35, length=18 (in A-loop)
ACGCGGCTCCTCGCCTGG
Intron
Comment/Decision
Genome/Seq. Info.-

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