The detailed information of tRNA gene sequence


Sequence ID>A17A000087
Genome IDCP001140
Search identical group
Phylum/ClassThermoproteota
SpeciesDesulfurococcus amylolyticus 1221n [CP001140]
Start position on genome 895249
End posion on genome 895364
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
actaaatgaT
tRNA gene sequence 
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGACTCGAGATCCGGTTGTCCCGGGTTCAA
GTCCCGGCGGCGGCATCt
Downstream region at tRNA end position 
tgttctttaa
Secondary structure (Cloverleaf model)
>A17A000087	Ser	CGA
                   T      ATCt tgttctttaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C*G A
intron: position=35, length=38 (in A-loop)
ATACGGGTTCACGGGTCCGTACCGAGGTCTGCCCAGGG
Intron
Comment/Decision
Genome/Seq. Info.-

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