The detailed information of tRNA gene sequence


Sequence ID>A17A000358
Genome IDCP001941
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum boonei T469 [CP001941]
Start position on genome 546270
End posion on genome 546146
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aagaaatgag
tRNA gene sequence 
GGGCCCGTGGGGTAGCTGGATATCCTCGGGGCCTCCAAAGCCCTTGACCCGGGTTCGAAT
CCCGGCGGGCCCGCtg
Downstream region at tRNA end position 
aagagacacc
Secondary structure (Cloverleaf model)
>A17A000358	Trp	CCA
                   g      GCtg aagagacacc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    T       T G G G       C C G G G     C
    G         | | +                 T T
    G       T C C T
      A T A        C     TGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C*A
intron: position=36, length=51 (in A-loop)
GGAAGCCCCTTTCTAAAGAAAGCGGCTTTACCCGTAAAGAAGGGGTTTAAG
Intron
Comment/Decision
Genome/Seq. Info.-

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