The detailed information of tRNA gene sequence


Sequence ID>A17A000488
Genome IDCP002278
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermus fervidus DSM 2088 [CP002278]
Start position on genome 847045
End posion on genome 847137
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
atactgtgaT
tRNA gene sequence 
GGGACCGTGGGGTAGCCAGGTCCATCCTCCCAGCCCGGAACGCTGGAGACCCGAGTTCAA
ATCTCGGCGGTCCCATCa
Downstream region at tRNA end position 
cattttctcc
Secondary structure (Cloverleaf model)
>A17A000488	Ser	GGA
                   T      ATCa cattttctcc
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
    C C G A        G      | | | | |     A
  A         T G G G       C C G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     AGAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  C       A
                    G*G A
intron: position=35, length=15 (in A-loop)
GGGATGGACCCACCG
Intron
Comment/Decision
Genome/Seq. Info.-

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