The detailed information of tRNA gene sequence


Sequence ID>A17A000539
Genome IDCP002535
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus hospitalis W1 [CP002535]
Start position on genome 687779
End posion on genome 687880
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ttttatattt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACCAAGGGGCTGGCCTTGAAAGCCAGTAGGGGAAACCCTGCA
CGGGTTCAAATCCCGTCCCCGGCGCCt
Downstream region at tRNA end position 
ttaacaaatt
Secondary structure (Cloverleaf model)
>A17A000539	Ser	TGA
                   t      GCCt ttaacaaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       A C G G G     C
    G         | | |                 T T
    A       A G G G
      C C A        G     TAGGGGAAACCCTGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T G*A
intron: position=36, length=16 (in A-loop)
AGAGGCAAAGCTTAAG
Intron
Comment/Decision
Genome/Seq. Info.-

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