The detailed information of tRNA gene sequence


Sequence ID>A17A000543
Genome IDCP002551
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobacterium lacus AL-21 [CP002551]
Start position on genome 770475
End posion on genome 770692
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ttttatcatc
tRNA gene sequence 
GGGGCCGTAGGGTAGCTTGGTCCATCCTCTCAGCCCGGAACGCTGGAGACCCGAGTTCAA
ATCTCGGCGGCCCCACta
Downstream region at tRNA end position 
cactttcatc
Secondary structure (Cloverleaf model)
>A17A000543	Ser	GGA
                   c      ACta cactttcatc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
    T C G A        A      | | | | |     A
  T         T G G G       C C G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     AGAC
                    T + G
                    C - G
                    A - T
                    G - C
                    C - G
                  C*      C
                  C       A
                    G G A
intron: position=33, length=142 (in A-loop)
ATTGAAAGAAGTATCCAGTTGAACAAACCAACAGGATCCAAATGGAAGCTTGAAAACTAAGATTTTTTAA
ACATCCTGGATCTTGTAGTTTGTGAAATGTATATTTTCTTCGACTGGAACGGGGATGGTCAATTTGATAC
AC
Intron
Comment/Decision
Genome/Seq. Info.-

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