The detailed information of tRNA gene sequence


Sequence ID>A17A000592
Genome IDCP002792
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermococcus okinawensis IH1 [CP002792]
Start position on genome 981083
End posion on genome 980964
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aattaacagT
tRNA gene sequence 
GCCGAGGTGGCTTAGGCTGGTTATAGCGCTCGGCTCGAAACCGAGAGGTCGGGGGTTCGA
GTCCCCCCCTCGGCATtt
Downstream region at tRNA end position 
tttataggtc
Secondary structure (Cloverleaf model)
>A17A000592	Ser	CGA
                   T      ATtt tttataggtc
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T G
                    T     C C C C C     A
    C G G A        G      | | | | |     G
  T         T T C G       G G G G G     C
  G           | | |                 T T
  G         T A G C
    T T A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C*G A
intron: position=35, length=43 (in A-loop)
ATACGGATATTCCCAAGGAGCAAATACTCTCCTTGGGTCCTGG
Intron
Comment/Decision
Genome/Seq. Info.-

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