The detailed information of tRNA gene sequence


Sequence ID>A17A000767
Genome IDCP003117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix harundinacea 6Ac [CP003117]
Start position on genome 469512
End posion on genome 469416
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tcgtaatcgt
tRNA gene sequence 
GCCGAGGTAGTCTAGTGGTAAGGCGCAAGCCTGGAAAGCTTGTGATTCGCAAGGGTCGCG
GGAGTTCGAATCTCCCCCTCGGCGCtc
Downstream region at tRNA end position 
ttttacaaat
Secondary structure (Cloverleaf model)
>A17A000767	Ser	GGA
                   t      GCtc ttttacaaat
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C T C     A
        G A        A      | | | | |     G
      T     T C T G       G G G A G     C
      G     | | + |                 T T
      G     A G G C
        T A        G     TGATTCGCAAGGGTCGC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    G G*A
intron: position=36, length=12 (in A-loop)
AATTCTCTACTG
Intron
Comment/Decision
Genome/Seq. Info.-

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