The detailed information of tRNA gene sequence


Sequence ID>A17A000811
Genome IDCP003316
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum oguniense TE7 [CP003316]
Start position on genome 2189671
End posion on genome 2189780
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gtaaaaacca
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTCGAGATCCCGTCCCCGTACAGGGGTC
GTGGGTTCAAATCCCACCCCCGGCGCCA
Downstream region at tRNA end position 
ctaaacgttt
Secondary structure (Cloverleaf model)
>A17A000811	Ser	CGA
                   a      GCCA ctaaacgttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGTACAGGGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C*      A
                  T       G
                    C G A
intron: position=33, length=22 (in A-loop)
CGCCGTAGCGGCGGCGCCAAAC
Intron
Comment/Decision
Genome/Seq. Info.-

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