The detailed information of tRNA gene sequence


Sequence ID>A17A001281
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 1070763
End posion on genome 1070666
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
aaacgttaag
tRNA gene sequence 
GGGCCGGTCGTCTAGTGGGAGGATGCCGCCCTTGCAAGGCGGCGGTCCCGGGTTCGAATC
CCGGCCGGTCCACtt
Downstream region at tRNA end position 
ctcagacggc
Secondary structure (Cloverleaf model)
>A17A001281	Ala	TGC
                   g      ACtt ctcagacggc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        C      | | | | |     G
      T     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        G A        G     CGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=25 (in A-loop)
GGGCTAATGTAGGGGCTCCGAGTAC
Intron
Comment/Decision
Genome/Seq. Info.-

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