The detailed information of tRNA gene sequence


Sequence ID>A17A001337
Genome IDCP011056
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus SARC-C [CP011056]
Start position on genome 1170328
End posion on genome 1170226
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ggggtaaagt
tRNA gene sequence 
AGCGGGGTGGGCTAGCCTGGTAAGGCCGCGGGGCTCGAAACCCCGAGGTCCCTGGTTCAA
ATCCAGGCCCCGCTACCA
Downstream region at tRNA end position 
tattatttct
Secondary structure (Cloverleaf model)
>A17A001337	Ser	CGA
                   t      ACCA tattatttct
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G A C C     A
    C C G A        G      | | | | |     A
  T         T C G G       C C T G G     C
  G         + | | |                 T T
  G         G G C C
    T A A          G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C*G A
intron: position=35, length=25 (in A-loop)
ATATACTCTTTAAAGCACGCGTTGG
Intron
Comment/Decision
Genome/Seq. Info.-

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