The detailed information of tRNA gene sequence


Sequence ID>A17A001342
Genome IDCP011056
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus SARC-C [CP011056]
Start position on genome 1877977
End posion on genome 1877892
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tagattaaga
tRNA gene sequence 
GGGCCCGTAGCTTAGCTTGGTGGAGCGCCCGGCTGGAAACCGGGAGGTCACGGGTTCAAA
TCCCGTCGGGCCCAtta
Downstream region at tRNA end position 
ctcatgtttt
Secondary structure (Cloverleaf model)
>A17A001342	Ser	GGA
                   a      Atta ctcatgtttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T G C C C     A
      C G A        A      | | | | |     A
    T       T T C G       A C G G G     C
    T       + | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G*G A
intron: position=35, length=12 (in A-loop)
ATAGGGTGCTCA
Intron
Comment/Decision
Genome/Seq. Info.-

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