The detailed information of tRNA gene sequence


Sequence ID>A17A001512
Genome IDCP016070
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalodesulfurarchaeum formicicum HTSR1 [CP016070]
Start position on genome 896142
End posion on genome 895970
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
cagggggtac
tRNA gene sequence 
GGGGCTGTGGCCAAGCCAGGAATGGCGACTGACTCCAGATCAGTCGATCGGGGGTTCAAA
TCCCTCCGGCCCCAtac
Downstream region at tRNA end position 
cacataaaag
Secondary structure (Cloverleaf model)
>A17A001512	Trp	CCA
                   c      Atac cacataaaag
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | + | | |     A
    C       A C C G       G G G G G     C
    A       | | | |                 T T
    G       T G G C
      G A A        G     CGATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=99 (in A-loop)
AGGTTTGCCGACGACGACACTCCAGACTGGTATACCGAGCGATCGACTGGCCCTCGATCGCGATGACGAC
CCTCTGGAGTGCCGAGGCGTACCGGGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK