The detailed information of tRNA gene sequence


Sequence ID>A17A001543
Genome IDCP017921
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanohalophilus halophilus Z-7982 [CP017921]
Start position on genome 1887043
End posion on genome 1886843
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
cgtgttttgc
tRNA gene sequence 
GGGGCTGTGGCCTAGCCAGGAATGGCGACGGGCTCCAGACCCGTCGATCGTGAGTTCGAA
TCTCACCAGCCCCACgt
Downstream region at tRNA end position 
ttttcttttc
Secondary structure (Cloverleaf model)
>A17A001543	Trp	CCA
                   c      ACgt ttttcttttc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C A C T C     A
      C G A        G      | | | | |     G
    C       T C C G       G T G A G     C
    A         | | |                 T T
    G       T G G C
      G A A        G     CGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C C*A
intron: position=36, length=126 (in A-loop)
AGCGGATAAATGATGAACAACGGGTCTACTGAGGCTTGCCCGACGGGGTTTGCCAGTGAGGAACCGTTGG
AGCACTGATATGTGTTCATAAGAACAGTCAAAGCTGCTAAGTGCAGTTGTTCGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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