The detailed information of tRNA gene sequence


Sequence ID>A17A001782
Genome IDHG425166
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobacterium sp. MB1 [HG425166]
Start position on genome 1801297
End posion on genome 1801144
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ttattcgtta
tRNA gene sequence 
GGGGTCATAGTGTAACCTGGCTATCATCTGGGACTCCAAATCCTAGGATCTGGGTTCAAA
TCCCGGTGACCCCAtta
Downstream region at tRNA end position 
actttttttt
Secondary structure (Cloverleaf model)
>A17A001782	Trp	CCA
                   a      Atta actttttttt
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     A - T          T A
                    T     G G C C C     A
    C C A A        A      | + | | |     A
  T         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    C T A          C     GGAT
                    T - A
                    G + T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C C*A
intron: position=36, length=80 (in A-loop)
AGTTGTCTTTGATGAAACGCGCGCTCTGACGTTAGGTATAACCAATCGGATGATGATCGATTGGAGTACT
GAGACAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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