The detailed information of tRNA gene sequence


Sequence ID>A178000003
Genome IDAM774415
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum R1 DSM 671 [AM774415]
Start position on genome 1209317
End posion on genome 1209159
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggcaagacga
tRNA gene sequence 
GCCCGGGTGGCTTAGCTGGTCATAGCGCCGCACTCATAATGCGGAGATCGAGGGTTCAAA
ACCCTCCCCGGGCACtc
Downstream region at tRNA end position 
ctgcgataca
Secondary structure (Cloverleaf model)
>A178000003	Met	CAT
                   a      ACtc ctgcgataca
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          A A
                    T     C T C C C     A
      C G A        G      | | | | |     A
    T       T T C G       G A G G G     C
    G         | | |                 T T
    G       T A G C
      T C A        G     AGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=84 (in A-loop)
GGGTATCGAGCTTCGGTGCGGCATCCCACTGCCACGTGGATGCTCAGCATGTCCGCGAGGCCCGCCGAGC
CTCGAACCTGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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