The detailed information of tRNA gene sequence


Sequence ID>A178000005
Genome IDAP011952
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter sp. CaT2 [AP011952]
Start position on genome 1414554
End posion on genome 1414445
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tataagtcat
tRNA gene sequence 
GCCGGGGTGGCTCAGCTGGTTAGAGCGCACGGCTCATAACCGTGAGGCCGCGGGTTCGAA
TCCCGCCCCCGGCACtt
Downstream region at tRNA end position 
taacccccca
Secondary structure (Cloverleaf model)
>A178000005	Met	CAT
                   t      ACtt taacccccca
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGCC
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=35 (in A-loop)
GGGTATTAAGCAGTGCTCTGACTTTTTCCTGGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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