The detailed information of tRNA gene sequence


Sequence ID>A178000028
Genome IDCP001338
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaerula palustris E1-9c [CP001338]
Start position on genome 1034477
End posion on genome 1034366
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cattgtgcga
tRNA gene sequence 
GCTGCGGTAGCCTAGCTTGGTCAGGGCGCCAGACTCATAATCTGGAGGTCGTGGGTTCGG
ATCCCACTCGCAGCAtcc
Downstream region at tRNA end position 
agagactctc
Secondary structure (Cloverleaf model)
>A178000028	Met	CAT
                   a      Atcc agagactctc
                     G - C
                     C - G
                     T - A
                     G - C
                     C - G
                     G - C
                     G + T          T A
                    T     C A C C C     G
    T C G A        A      | | | | |     G
  T         T C C G       G T G G G     C
  G         + | | |                 T T
  G         G G G C
    T C A          G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=37 (in A-loop)
GGGTTTAACGAGCATATGAGGCGCCAGAATCTGAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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