The detailed information of tRNA gene sequence


Sequence ID>A178000117
Genome IDCP001868
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
Start position on genome 456016
End posion on genome 456120
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
tggagtgcga
tRNA gene sequence 
GCCGCCGTAGCTCAGTTGGTAGAGCACCTCGCTGTTAACGAGGTGGTCCCAGGTTCGAGT
CCTGGCGGCGGCGCtt
Downstream region at tRNA end position 
ctgttgtggt
Secondary structure (Cloverleaf model)
>A178000117	Asn	GTT
                   a      GCtt ctgttgtggt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G G T C C     A
      T G A        A      | | | | |     G
    T       C T C G       C C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     TGGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    G - C
                  C       A
                  T       A *
                    G T T
intron: position=38, length=31 (in A-loop)
TGGATTGCAGTTTCGGCTGCGGTCCGCAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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