The detailed information of tRNA gene sequence


Sequence ID>A178000119
Genome IDCP001868
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
Start position on genome 1221655
End posion on genome 1221831
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
agatcgaatc
tRNA gene sequence 
GGGGCTGTGGCCAAGCCCGGCATGGCGACTGACTCCAGATCAGTCGATCGGGGGTTCAAA
TCCCTCCGGCCCCAtac
Downstream region at tRNA end position 
ctaaaataac
Secondary structure (Cloverleaf model)
>A178000119	Trp	CCA
                   c      Atac ctaaaataac
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | + | | |     A
    C       A C C G       G G G G G     C
    C       | | | |                 T T
    G       T G G C
      G C A        G     CGATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=103 (in A-loop)
AGGCTTGGCGCCCGGGACGACACTCCAGCTGATATACTGAGCGGCCGACTGATCATCGGTCGTGTTGACG
ACCCTCTGGAGTTCCGAGGCGCACACCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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