The detailed information of tRNA gene sequence


Sequence ID>A178000133
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 1245998
End posion on genome 1245864
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position
cattaatagc
tRNA gene sequence
GCCGGGGTAGCTCAGCACGGTAGAGCGCCGGGCTGTTAACCCGGTGGTCCGGGGTTCGAG
TCCCCGCCCCGGCGCta
Downstream region at tRNA end position
atcagtttct
Secondary structure (Cloverleaf model)
>A178000133	Asn	GTT
                   c      GCta atcagtttct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     G
    A       C T C G       C G G G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
intron: position=38, length=60 (in A-loop)
AAGGGGGTTGTAAACCAGCCCCCTGCAGAAACCCGTTTCGAAAAGCCTGGTATGGCGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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