The detailed information of tRNA gene sequence


Sequence ID>A178000142
Genome IDCP002051
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus hellenicus DSM 12710 [CP002051]
Start position on genome 141447
End posion on genome 141570
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
atggagaaaa
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTTAAAGGGGGCGGACTCAAGATCCGCTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position 
tctcaattat
Secondary structure (Cloverleaf model)
>A178000142	Leu	CAA
                   a      ACCA tctcaattat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T T A A        G     TGGCGTAGGCCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
intron: position=38, length=36 (in A-loop)
ACAGGGCCGACATAATGGTGGTTAGGCCCAGGGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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