The detailed information of tRNA gene sequence


Sequence ID>A178000154
Genome IDCP002051
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus hellenicus DSM 12710 [CP002051]
Start position on genome 1525973
End posion on genome 1525869
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
ccagaacggt
tRNA gene sequence 
GCCGGGGTAGCTCAGCCTGGTAGAGCGCCGGGCTGTTAACCCGGTGGTCCGGGGTTCAAA
TCCCCGCCCCGGCGCtc
Downstream region at tRNA end position 
tctcctattt
Secondary structure (Cloverleaf model)
>A178000154	Asn	GTT
                   t      GCtc tctcctattt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
intron: position=38, length=30 (in A-loop)
ACCCACGGGTTCGAGAATAGCCTGGCAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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