The detailed information of tRNA gene sequence


Sequence ID>A178000164
Genome IDCP002098
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnisphaera aggregans DSM 17230 [CP002098]
Start position on genome 1184605
End posion on genome 1184513
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aaatcttgaT
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGTTAGAGCGCCAGACTCATAATCTGGTGGTCGCGGGTTCAA
ATCCCGCCGGCGGCATtc
Downstream region at tRNA end position 
tcaattatta
Secondary structure (Cloverleaf model)
>A178000164	Met	CAT
                   T      ATtc tcaattatta
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
    C C G A        A      | | | | |     A
  C         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=16 (in A-loop)
AGCTATTGGTTGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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