The detailed information of tRNA gene sequence


Sequence ID>A178000166
Genome IDCP002100
Search identical group
Phylum/ClassThermoproteota
SpeciesVulcanisaeta distributa DSM 14429 [CP002100]
Start position on genome 1828243
End posion on genome 1828344
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aaaagaaaac
tRNA gene sequence 
GCCGGGGTGGCCGAGCACGGTTAAGGCGCGGGACTCGAGATCCCGTCCCCGCAAGGGGGC
CCGGGTTCAAATCCCGGCCCCGGCACCA
Downstream region at tRNA end position 
acacggatta
Secondary structure (Cloverleaf model)
>A178000166	Ser	CGA
                   c      ACCA acacggatta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    A C G A        G      | | | | |     A
  C         G C C G       C C G G G     C
  G           | | |                 T T
  G         A G G C
    T T A          G     TCCCCGCAAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C G A
intron: position=38, length=14 (in A-loop)
AGCAAGGCCAAGGC
Intron
Comment/Decision
Genome/Seq. Info.-

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