The detailed information of tRNA gene sequence


Sequence ID>A178000219
Genome IDCP002535
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus hospitalis W1 [CP002535]
Start position on genome 814585
End posion on genome 814675
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
ttatttttgt
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGTAGAGCGACGGGCTCTTAACCCGTAGGTCCCGGGTTCGAA
TCCCGGCGGGCCCGCCA
Downstream region at tRNA end position 
ccatttttat
Secondary structure (Cloverleaf model)
>A178000219	Lys	CTT
                   t      GCCA ccatttttat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    C       C T C G       C C G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C T T
intron: position=38, length=14 (in A-loop)
ACCGCTAGGGAGTA
Intron
Comment/Decision
Genome/Seq. Info.-

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