The detailed information of tRNA gene sequence


Sequence ID>A178000221
Genome IDCP002535
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus hospitalis W1 [CP002535]
Start position on genome 1183688
End posion on genome 1183775
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
aatttaatat
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGGTAGAGCGCCGGCCTTGTAAGCCGGCGGTCGCGGGTTCAAAT
CCCGCCGGCGGCTCta
Downstream region at tRNA end position 
gtgaaagtca
Secondary structure (Cloverleaf model)
>A178000221	Thr	TGT
                   t      TCta gtgaaagtca
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    G       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T G T
intron: position=38, length=14 (in A-loop)
AGGCCTACTAAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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