The detailed information of tRNA gene sequence


Sequence ID>A178000227
Genome IDCP002565
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix soehngenii GP6 [CP002565]
Start position on genome 1086539
End posion on genome 1086629
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
caggccgcga
tRNA gene sequence 
GGGCTCGTAGCTCAGTTAGGCAGAGCGTCTGGCTTTTAACCAGGTGGTCGAGGGTTCAAA
TCCCCCCGAGCCCGttt
Downstream region at tRNA end position 
ggagtttcct
Secondary structure (Cloverleaf model)
>A178000227	Lys	TTT
                   a      Gttt ggagtttcct
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     C C C C C     A
      T G A        A      |   | | |     A
    T       C T C G       G A G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    T + G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A *
                    T T T
intron: position=38, length=17 (in A-loop)
AATTTTTGCATGAAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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