The detailed information of tRNA gene sequence


Sequence ID>A178000228
Genome IDCP002565
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix soehngenii GP6 [CP002565]
Start position on genome 1608903
End posion on genome 1609106
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ctttaaaacc
tRNA gene sequence 
GGGGCTGTGGCCTAGCCAGGTAGGGCGATGGGCTCCAGACCCGTCGATCGTGAGTTCGAA
TCTCACCAGCCCCACat
Downstream region at tRNA end position 
ttttccctgg
Secondary structure (Cloverleaf model)
>A178000228	Trp	CCA
                   c      ACat ttttccctgg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C A C T C     A
      C G A        G      | | | | |     G
    C       T C C G       G T G A G     C
    A       + | | |                 T T
    G       G G G C
      G T A        G     CGATC
                    A - T
                    T + G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=129 (in A-loop)
CGGTATATTTGATGATGAGCAACGGGTCTGCTGAGATCTCTCGACGGGGAGGTCGTTGATGATCCGTTGG
AGCACTGAAATGGGTTGTTACGGCGGTGAAATCGCTGTAAGAACTTCAGTATCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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