The detailed information of tRNA gene sequence


Sequence ID>A178000229
Genome IDCP002565
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix soehngenii GP6 [CP002565]
Start position on genome 1714235
End posion on genome 1714145
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
gtcccagagG
tRNA gene sequence 
GCCGCCGTGGCTTAGCCCGGTTAAAGCGGCTGATTCGTAATCAGCAGTTCATGGGTTCGA
ATCCCATCGGCGGCTTtt
Downstream region at tRNA end position 
tatttttaaa
Secondary structure (Cloverleaf model)
>A178000229	Thr	CGT
                   G      TTtt tatttttaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     T A C C C     A
    C C G A        G      | | | | |     G
  C         T T C G       A T G G G     C
  G         | | | |                 T T
  G         A A G C
    T T A          G     AGTTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A *
                    C G T
intron: position=38, length=14 (in A-loop)
AGATGGTCCGAAAG
Intron
Comment/Decision
Genome/Seq. Info.-

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