The detailed information of tRNA gene sequence


Sequence ID>A178000231
Genome IDCP002565
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix soehngenii GP6 [CP002565]
Start position on genome 2808425
End posion on genome 2808334
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
ctcatttgaT
tRNA gene sequence 
GGGCTCGTAGGGTAGTGGATATCCTAGCGGGCTTCGGACCCGCTGACCTGGGTTCGAGTC
CCAGCGAGTCCGTta
Downstream region at tRNA end position 
tttctgcttt
Secondary structure (Cloverleaf model)
>A178000231	Arg	TCG
                   T      GTta tttctgcttt
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     C - G
                     G - C          T G
                    T     G A C C C     A
      T G A        A      | | | | |     G
    G       T G G G       C T G G G     C
    G         | | +                 T T
    A       T C C T
      T A          A     TGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    T C G
intron: position=38, length=18 (in A-loop)
TGGCTATTTGTCGAAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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