The detailed information of tRNA gene sequence


Sequence ID>A178000238
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 111110
End posion on genome 111244
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gatcggtaaT
tRNA gene sequence 
GGGCCCATAGCTCAGCCAGGTTAGAGTGCTGGGCTCCAGACCCAGTGGTCCGGGGTTCGA
ATCCCCGTGGGCCCATta
Downstream region at tRNA end position 
attttactct
Secondary structure (Cloverleaf model)
>A178000238	Trp	CCA
                   T      ATta attttactct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       C G G G G     C
  G         | | | +                 T T
  G         G A G T
    T T A          G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=58 (in A-loop)
ATAACAAGCATTGGGTCTGTCGACCCGTGAGGGGATGAAGTATATCTGGAATGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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