The detailed information of tRNA gene sequence


Sequence ID>A178000243
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 538909
End posion on genome 538997
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
ttaaagatag
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAAGCCGAGGGTCGGGGGTCCGA
ATCCCCCCGGGTCCGCtc
Downstream region at tRNA end position 
cctcaaccta
Secondary structure (Cloverleaf model)
>A178000243	Arg	CCT
                   g      GCtc cctcaaccta
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       G G G G G     C
  G         | | | |                 T C
  G         G A G C
    A T A          G     GGGTC
                    C   A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
intron: position=38, length=13 (in A-loop)
AGAGGTCGAAGTG
Intron
Comment/Decision
Genome/Seq. Info.-

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