The detailed information of tRNA gene sequence


Sequence ID>A178000250
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 1803718
End posion on genome 1803827
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
tctataaaaT
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACCAAGGGGGTAGGCTCGAGACCTACTGCCTCTAAGAGGTAC
ACGGGTTCGAATCCCGTCCCCGGCGTat
Downstream region at tRNA end position 
gacttagatt
Secondary structure (Cloverleaf model)
>A178000250	Ser	CGA
                   T      GTat gacttagatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       A C G G G     C
    G         | | |                 T T
    A       A G G G
      C C A        G     TGCCTCTAAGAGGTAC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
intron: position=38, length=23 (in A-loop)
ACCGTTCCAGCGTAAAGGGAGCT
Intron
Comment/Decision
Genome/Seq. Info.-

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