The detailed information of tRNA gene sequence


Sequence ID>A178000290
Genome IDCP003083
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanolobus psychrophilus R15 [CP003083]
Start position on genome 410176
End posion on genome 410274
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
acattcctgt
tRNA gene sequence 
GGGCTCGTAGGGTAGCCAGGATATCCTGATGGGCTTCGAACCCATTGACCCGCGTTCGAA
TCGCGGCGGGCCCGCtt
Downstream region at tRNA end position 
gctctttttc
Secondary structure (Cloverleaf model)
>A178000290	Arg	TCG
                   t      GCtt gctctttttc
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C G C     A
    C C G A        A      | | | | |     G
  A         T G G G       C C G C G     C
  G           | | +                 T T
  G         T C C T
    A T A          G     TGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T C G
intron: position=38, length=24 (in A-loop)
AGAGGTTTTATTTGCCCCGAAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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