The detailed information of tRNA gene sequence


Sequence ID>A178000293
Genome IDCP003098
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum ferrireducens 1860 [CP003098]
Start position on genome 228764
End posion on genome 228675
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position
taaatgtaaa
tRNA gene sequence
GGGCCCGTGGCTCAGCCCGGTAGAGCGGCGGCCTTCGGAGCCGTAGGTCGTGGGTTCAAA
TCCCACCGGGCCCGCCt
Downstream region at tRNA end position
cgacgccgtc
Secondary structure (Cloverleaf model)
>A178000293	Arg	TCG
                   a      GCCt cgacgccgtc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    C       C T C G       G T G G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T C G
intron: position=38, length=14 (in A-loop)
AGCGCGGCGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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