The detailed information of tRNA gene sequence


Sequence ID>A178000298
Genome IDCP003117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix harundinacea 6Ac [CP003117]
Start position on genome 626231
End posion on genome 626123
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gatctgctgt
tRNA gene sequence 
GCCGGGGTGGCCTAGCTGGTTAGGGCGCCAGACTCATAATCTGGAAGTCACGGGTTCGGA
TCCCGTTCCCGGCACCt
Downstream region at tRNA end position 
aacttttacc
Secondary structure (Cloverleaf model)
>A178000298	Met	CAT
                   t      ACCt aacttttacc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     T G C C C     G
      C G A        G      | | | | |     G
    T       T C C G       A C G G G     C
    G       + | | |                 T T
    G       G G G C
      T T A        G     AAGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=33 (in A-loop)
GGGAACGAAAATGAGGCGCTCGTCTCCTGAGGC
Intron
Comment/Decision
Genome/Seq. Info.-

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