The detailed information of tRNA gene sequence


Sequence ID>A178000301
Genome IDCP003117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix harundinacea 6Ac [CP003117]
Start position on genome 2510046
End posion on genome 2509956
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ccggcatcgg
tRNA gene sequence 
GTCCCGATAGGGTAGTGGACATCCTAGAGGCCTGCGGAGCCTCAGACCCGGGTTCGAATC
CCGGTCGGGACGtta
Downstream region at tRNA end position 
tttctggaca
Secondary structure (Cloverleaf model)
>A178000301	Arg	GCG
                   g      Gtta tttctggaca
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      C A          A     AGAC
                    G - C
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G C G
intron: position=38, length=19 (in A-loop)
AGCCGAGGGCAGCGCAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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