The detailed information of tRNA gene sequence


Sequence ID>A178000306
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 504183
End posion on genome 504061
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
gccccttact
tRNA gene sequence 
GCCCCGGTAGTGTAGCGGCCTATCATGCGGGCCTGTCGAGCCCGCGACCCGGGTTCAAAT
CCCGGCCGGGGCGCtt
Downstream region at tRNA end position 
cccttttgca
Secondary structure (Cloverleaf model)
>A178000306	Asp	GTC
                   t      GCtt cccttttgca
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       T G T G       C C G G G     C
    G         | | +                 T T
    C       T C A T
      C T A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G T C
intron: position=38, length=49 (in A-loop)
AAAAGCCCCTTAGAAAGGTGCTTTACCCCTAAATGGTGGCTTTGCAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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