The detailed information of tRNA gene sequence


Sequence ID>A178000312
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 1394503
End posion on genome 1394633
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gcaactgcat
tRNA gene sequence 
GCTCCGGTGGTGTAGCCCGGCCAAGCATTCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGAGCACtg
Downstream region at tRNA end position 
agcccatttc
Secondary structure (Cloverleaf model)
>A178000312	Glu	TTC
                   t      ACtg agcccatttc
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G         + | | +                 T T
  G         G C A T
    C C A A        T     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T T C
intron: position=38, length=55 (in A-loop)
AAAAGCCCCTTTGGAAAAGATGCTTTACCCCAAAGGGGTATCGGGCTTTGAAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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