The detailed information of tRNA gene sequence


Sequence ID>A178000334
Genome IDCP003378
Search identical group
Phylum/ClassThermoproteota
SpeciesCaldisphaera lagunensis DSM 15908 [CP003378]
Start position on genome 721131
End posion on genome 721236
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
tagaaggcga
tRNA gene sequence 
GCCGCGGTCGTATAGTCTGGCCTAGTATGCGGGCCTGTCAAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCGCCA
Downstream region at tRNA end position 
taactattgt
Secondary structure (Cloverleaf model)
>A178000334	Asp	GTC
                   a      GCCA taactattgt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        C      | | | | |     A
  T         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G T C
intron: position=38, length=28 (in A-loop)
AGAGTAATGTGAGAAAAATCTCACAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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