The detailed information of tRNA gene sequence


Sequence ID>A178000338
Genome IDCP003423
Search identical group
Phylum/ClassThermoproteota
SpeciesFervidicoccus fontis Kam940 [CP003423]
Start position on genome 567457
End posion on genome 567581
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
agtagagggc
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCTAAGGCGGTGGGCTCGAGACCCACTGCTCCTTGCGGGGCG
CGCGGGTTCAAATCCCGCCCCCGGCGCCt
Downstream region at tRNA end position 
tagtgcgcta
Secondary structure (Cloverleaf model)
>A178000338	Ser	CGA
                   c      GCCt tagtgcgcta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TGCTCCTTGCGGGGCGC
                    G - C
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
intron: position=38, length=37 (in A-loop)
ACCATAAGGATGAGTCGTTTCCGGCCTTCAGCAGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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