The detailed information of tRNA gene sequence


Sequence ID>A178000339
Genome IDCP003423
Search identical group
Phylum/ClassThermoproteota
SpeciesFervidicoccus fontis Kam940 [CP003423]
Start position on genome 956418
End posion on genome 956525
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
agatgtgagt
tRNA gene sequence
GCCGCGGTAGCTCAGCCCTGGTGGAGCGCCGGACTCATAATCCGGAGGTCCGGGGTTCGA
ATCCCCGCCGCGGCACCA
Downstream region at tRNA end position
agattgatta
Secondary structure (Cloverleaf model)
>A178000339	Met	CAT
                   t      ACCA agattgatta
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C G G G G     C
  T         | | | |                 T T
  G         G A G C
    G T G          G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=30 (in A-loop)
CGGTTAAAAAAGAAAGGTCGTTCCTGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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