The detailed information of tRNA gene sequence


Sequence ID>A178000363
Genome IDCP003929
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronococcus occultus SP4 [CP003929]
Start position on genome 3737496
End posion on genome 3737648
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tcgaaaacga
tRNA gene sequence 
GCCCGGGTGGCTTAGCTGGACATAGCGCCGCACTCATAATGCGGAGATCGAGGGTTCGGA
GCCCTCCCCGGGCACtc
Downstream region at tRNA end position 
atcaaattat
Secondary structure (Cloverleaf model)
>A178000363	Met	CAT
                   a      ACtc atcaaattat
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          G A
                    T     C T C C C     G
      C G A        G      | | | | |     G
    T       T T C G       G A G G G     C
    G         | | |                 T T
    G       T A G C
      A C A        G     AGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=78 (in A-loop)
GGGTTCAGAGATTCGGTGCGGTTTCGCCTTGGAAGCCTCCGTGTCCCACAGAGGACTGCCGAGCCTCGGA
CCTGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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